Challenges in Top-Down, Bottom-Up, Computational and ELSI Approaches in Synthetic Biology a symposium sponsored by SynBioNT
Thursday 18 March 2010 - Monday 22 March 2010
Crowne Plaza Hotel Nottingham, Wollaton Street, Nottingham NG1 5RH
One of the biggest unanswered scientific questions is how what we term as life actually emerged from the primordial soup several billion years ago. As a proxy for understanding the question of the origins of life, synthetic biologists are attempting to develop "artificial life", and are doing so by following two separate and competing routes: the top-down and bottom-up approaches to minimal cells (also called "protocells" or "chells" for chemical cells). In the former, a primordial or minimal cell is generated by systematically reducing a biological cell's genome until only essential genes remain. The bottom-up methodology, on the other hand, seeks to assemble from scratch components or information units until an aspect of life emerges. On the other hand, computational modelling for the top-down reduced biological cells and the bottom-up complexified protocells, aims at formalizing and operationalising life's processes. Along the way, by tackling modeling issues from both directions, computational endeavours might shed light on the limits of modelling and perhaps produce deeper insights not only for synthetic biology but also for systems biology. The Synthetic Biology Network for Modelling and Programming Cell- Chell Interactions (SynBioNT), funded in March 2008 by a grant from the BBSRC (with participation from EPSRC & ESRC), UK, invites participation in its sponsored symposium "Challenges in Top-Down, Bottom-Up and Computational Approaches in Synthetic Biology".
This symposium invites speakers and participants working in the following themes: (1) synthetic biology (top-down); (2) artificial chemical cells (chells, protocells, minimal cells) (bottom-up); (3) artificial computational cells and systems biology modelling; and (4) ethical, legal and social issues in synthetic biology. The three technical routes are necessary to systematically chart the possible paths to a successful and complete understanding of life, and its potential instrumentalisation towards fulfilling and securing societal needs.
During the symposium we also held a public engagement event at the Broadway Cinema.
Chairs
- Prof. Natalio Krasnogor, School of Computer Science, University of Nottingham (talks)
- Dr. Paul Martin, Institute for Science and Society, University of Nottingham (talks)
- Andrew Balmer, Institute for Science and Society, University of Nottingham (talks)
Speakers
- Prof. David E. Goldberg, Department of Industrial and Enterprise Systems Engineering (IESE) University of Illinois, Urbana-Champaign, USA (talks)
- Dr. Nick Monk, School of Mathematical Sciences, University of Nottingham (talks)
- Prof. Cameron Alexander, School of Pharmacy, University of Nottingham (talks)
- Dr. Leonardo Bich, University of Bergamo, Italy (talks)
- Dr. Fabio Mavelli, Chemistry Department, University of Bari, Italy (talks)
- Dr. Francois Kepes, French National Center for Scientific Research, France (talks)
- Dr. Pasquale Stano, Department of Biology, Universita degli Studi di Roma Tre (talks)
- Dr. Francisco Jose Romero Campero, School of Computer Science, University of Nottingham (talks)
- Dr. Karima Righetti, Center for Biological Sciences, University of Nottingham (talks)
- Prof. Miguel Camara, Institute of Infection, Immunity and Inflamation, University of Nottingham (talks)
- Dr. James Lu, Johann Radon Institute for Computational and Applied Mathematics, Austria (talks)
- Dr. Martyn Amos, Department of Computing and Mathematics, Manchester Metropolitan University (talks)
- Dr. Sara Kalvala, Department of Computer Science, University of Warwick (talks)
- Prof. David Gilbert, School of Information Systems, Computing and Mathematics, Brunel University (talks)
Presentations
Polymersomes for Minimal Synthetic Cells - Theory and Experiment
Formal methods for Synthetic Biology - are there any benefits?
Deterministic and Stochastic approaches to minimal cell models: the Ribocell case studyand
Pattern Formation in Synthetic Bacterial Colonies (webpage)and
Pattern Formation in Synthetic Bacterial Colonies (slides)
Inverse qualitative problems from computational design in synthetic biology
Dissecting the quorum sensing regulatory networks in Pseudomonas aeruginosa
Dissecting a simple genetic circuit: how much do we need to model?
Synthetic (Constructive) Biology: From Vesicles Self-Reproduction to Semi-Synthetic Minimal Cells